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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22960106_22960734_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22960106 - 22960734
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
GLSVLRSFRLLRVFKLAKSW
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
92.7
0.96
0.6
85.4
29.3
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016174
22919956 - 22988983
69028
ENSAPLT00000029837
22919956 - 22988983
69028
ENSAPLT00000018532
22919956 - 22988983
69028
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000039202
22919956 - 22988983
69028