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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22960909_22963271_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22960909 - 22963271

Intron Length:

2363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTCTA

5'SS Class:

strong_major

3'SS Sequence:

ATTCTGAATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

GCATTCTGAATT

Flanking Amino Acid:

FNNVLSVGNLVFTGIFTAEM

Intron Amino Acid Position:

814

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.9

79.8

35.3

Major BPS

82.1

0.8

71.6

36.4

Major PPT

71.1

0.48

67.6

42.2

Minor 5ss

37.9

-1.4

47.1

42.6

Minor BPS

60.4

0.4

1.4

70.06

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016194

22919956 - 22988983

69028

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000039202

22919956 - 22988983

69028

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000029837

22919956 - 22988983

69028

ENSAPLT00000018532

22919956 - 22988983

69028