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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22964390_22965561_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22964390 - 22965561
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
IIDKPATDDNGTTTETEIRK
Intron Amino Acid Position:
690

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
73.7
36.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.2
0.88
0.7
85.8
27.5
Minor 5ss
35.2
-1.7
3
45.2
42.8
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029837
22919956 - 22988983
69028
ENSAPLT00000016174
22919956 - 22988983
69028