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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22964390_22965594_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22964390 - 22965594
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATAATA
5'SS Class:
major
3'SS Sequence:
TTTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
TSPVGQLLPEGTTTETEIRK
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
78.8
29.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.2
0.88
0.7
85.8
27.5
Minor 5ss
31.7
-2.1
3
40.3
45.4
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018532
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000012407
22961042 - 22988983
27942
ENSAPLT00000039202
22919956 - 22988983
69028