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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22965943_22966696_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22965943 - 22966696

Intron Length:

754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGCAT

5'SS Class:

major

3'SS Sequence:

TGTTTGCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

TAATTATAAATT

Flanking Amino Acid:

YEKKYSSPHQSLLSIRGSLF

Intron Amino Acid Position:

563

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

62.6

43.3

Major BPS

0.75

78.6

Major PPT

80.4

0.68

0.9

36.8

Minor 5ss

31.4

-2.1

3.6

47.4

Minor BPS

50.7

0.1

1.9

70.77

40.2

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018532

22919956 - 22988983

69028

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000039202

22919956 - 22988983

69028

ENSAPLT00000012407

22961042 - 22988983

27942

ENSAPLT00000029837

22919956 - 22988983

69028