Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22966961_22967430_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22966961 - 22967430

Intron Length:

470

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTACAATAA

5'SS Class:

major

3'SS Sequence:

AGCATCTGCCGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAGTAAC

U12 Branch Point Sequence:

GCAGCAGTAACA

Flanking Amino Acid:

QQEAAQVYLMSREPSAAEGA

Intron Amino Acid Position:

468

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.1

60.1

34.9

Major BPS

54.4

0.11

1.2

36.4

Major PPT

45.1

-0.2

1.7

42.4

42.6

Minor 5ss

35.7

-1.6

3.3

43.7

45.8

Minor BPS

44.1

-0.4

2.3

53.93

44.2

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039202

22919956 - 22988983

69028