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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22967003_22967451_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22967003 - 22967451

Intron Length:

449

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAA|GCGGCTCAG

5'SS Class:

weak_major

3'SS Sequence:

TGCAATGTGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

ATTTGCTCAATG

Flanking Amino Acid:

MLEQLKKQQEAAAVAAAAVT

Intron Amino Acid Position:

461

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.5

0.13

1.3

42.5

Major BPS

0.82

0.8

24.9

Major PPT

59.1

0.2

1.1

53.5

45.5

Minor 5ss

23.7

-3

3.9

30.8

37.1

Minor BPS

55.3

0.03

42.2

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000038313

22966604 - 22988983

22380

ENSAPLT00000012407

22961042 - 22988983

27942

ENSAPLT00000029837

22919956 - 22988983

69028

ENSAPLT00000018532

22919956 - 22988983

69028