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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22967650_22967798_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22967650 - 22967798
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGCTTATAAAT
Flanking Amino Acid:
QDFWENLYQLTLRAAGKTYM
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
82.4
29.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.3
0.73
0.8
73.6
35.9
Minor 5ss
34.1
-1.8
3.2
46.4
43
Minor BPS
50.4
0.09
1.7
71.17
39.6

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000038313
22966604 - 22988983
22380
ENSAPLT00000016174
22919956 - 22988983
69028
ENSAPLT00000029837
22919956 - 22988983
69028
ENSAPLT00000012407
22961042 - 22988983
27942
ENSAPLT00000018532
22919956 - 22988983
69028
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000039202
22919956 - 22988983
69028