Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22967941_22968590_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22967941 - 22968590

Intron Length:

650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGACCA

5'SS Class:

major

3'SS Sequence:

TTTGTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGTAA

U12 Branch Point Sequence:

TGTAAGGTAACA

Flanking Amino Acid:

ALLCGNSSDAGQCPEGYTCV

Intron Amino Acid Position:

347

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

65.3

40.7

Major BPS

54.5

0.11

1.4

55.7

41.6

Major PPT

89.7

0.89

0.7

84.7

30.1

Minor 5ss

31.8

-2.1

32.6

41.5

Minor BPS

42.5

-0.5

2.6

61.92

43.7

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018532

22919956 - 22988983

69028

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000039202

22919956 - 22988983

69028

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000038313

22966604 - 22988983

22380

ENSAPLT00000012407

22961042 - 22988983

27942

ENSAPLT00000029837

22919956 - 22988983

69028