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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22974157_22975112_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22974157 - 22975112
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTACATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AATTCCTTTACA
Flanking Amino Acid:
RALKTISVIPGLKTIVGALI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.6
0.76
0.8
77
36.1
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
73.6
0.74
1.6
79.23
36.7

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012407
22961042 - 22988983
27942
ENSAPLT00000029837
22919956 - 22988983
69028
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000016174
22919956 - 22988983
69028
ENSAPLT00000038313
22966604 - 22988983
22380