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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22974157_22975302_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22974157 - 22975302
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTACATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AATTCCTTTACA
Flanking Amino Acid:
RALKTISVIPGLKTIVGALI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
83.6
0.76
0.8
77
36.1
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
73.6
0.74
1.6
79.23
36.7

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039202
22919956 - 22988983
69028