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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22975205_22975911_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22975205 - 22975911
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TCCCCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TGTGTGTGAACT
Flanking Amino Acid:
NWLDFTVITFAYVTEFVDLG
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
76.2
39.9
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
78.5
0.64
0.8
72.1
31
Minor 5ss
39.6
-1.2
3.4
53.7
43.8
Minor BPS
48.6
-0
2.2
72.98
43.9

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012407
22961042 - 22988983
27942
ENSAPLT00000029837
22919956 - 22988983
69028
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000016174
22919956 - 22988983
69028