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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22975395_22975911_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22975395 - 22975911
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTAATCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTGCCTAAATT
Flanking Amino Acid:
NWLDFTVITFAYVTEFVNLG
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
76.2
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.6
0.69
0.9
73.6
36.6
Minor 5ss
39.6
-1.2
3.4
53.7
43.8
Minor BPS
70
0.71
1.7
87.41
38.9

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039202
22919956 - 22988983
69028