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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_22976041_22976887_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22976041 - 22976887
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TAATATTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTTACTTAAAT
Flanking Amino Acid:
SNPPDWTKNVEYTFTGIYTF
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.9
40
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.8
0.65
0.9
69.9
45
Minor 5ss
41.8
-0.9
2.8
49.2
41.2
Minor BPS
72.8
0.79
1.6
87.73
36.6

Associated Gene:

Gene:
SCN1A
Ensembl Gene ID:
ENSAPLG00000015499
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016194
22919956 - 22988983
69028
ENSAPLT00000016179
22921464 - 22988983
67520
ENSAPLT00000039202
22919956 - 22988983
69028
ENSAPLT00000016174
22919956 - 22988983
69028
ENSAPLT00000029837
22919956 - 22988983
69028
ENSAPLT00000012407
22961042 - 22988983
27942
ENSAPLT00000018532
22919956 - 22988983
69028