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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22976969_22981162_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

22976969 - 22981162

Intron Length:

4194

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTGGTTCAA

5'SS Class:

weak_major

3'SS Sequence:

CTACATTATTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATTAT

U12 Branch Point Sequence:

TTTTCCTTAACT

Flanking Amino Acid:

KILVHSYPFQYMLIMCTILT

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.6

0.06

1.1

49.4

36.6

Major BPS

72.4

0.56

1.1

63.7

42.3

Major PPT

72.5

0.51

69.7

40.1

Minor 5ss

28.6

-2.5

3.1

32.7

37.3

Minor BPS

100

1.65

0.3

108.3

8.33

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016194

22919956 - 22988983

69028

ENSAPLT00000039202

22919956 - 22988983

69028

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000038313

22966604 - 22988983

22380

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000029837

22919956 - 22988983

69028

ENSAPLT00000012407

22961042 - 22988983

27942

ENSAPLT00000018532

22919956 - 22988983

69028