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Intron Name: Anas_platyrhynchos_platyrhynchos_7_22981297_22988716_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22981297 - 22988716

Intron Length:

7420

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TCCTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

TGTCTTATAAAA

Flanking Amino Acid:

DMDPYYINKKTFIVLNKGKA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.9

33.7

Major BPS

78.6

0.71

78.6

Major PPT

88.9

0.87

0.6

87.4

22.9

Minor 5ss

34.1

-1.8

41.4

39.1

Minor BPS

49.4

-0

1.7

63.65

35.9

Associated Gene:

Gene:

SCN1A

Ensembl Gene ID:

ENSAPLG00000015499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016179

22921464 - 22988983

67520

ENSAPLT00000038313

22966604 - 22988983

22380

ENSAPLT00000016174

22919956 - 22988983

69028

ENSAPLT00000029837

22919956 - 22988983

69028

ENSAPLT00000012407

22961042 - 22988983

27942

ENSAPLT00000018532

22919956 - 22988983

69028

ENSAPLT00000016194

22919956 - 22988983

69028

ENSAPLT00000039202

22919956 - 22988983

69028