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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23053042_23056116_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23053042 - 23056116
Intron Length:
3075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
ACTTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAAATGTTAACA
Flanking Amino Acid:
GAGYLSLLQVATFKGWMDIM
Intron Amino Acid Position:
1094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.3
74.2
36.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79.6
0.67
0.8
77.4
36.3
Minor 5ss
37.8
-1.4
3.3
49.7
41.3
Minor BPS
49.3
-0
2
60.45
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046065
23046379 - 23091426
45048
ENSAPLT00000017519
23046379 - 23091426
45048