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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23056801_23058799_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23056801 - 23058799
Intron Length:
1999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTCTTTCATCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCTTTCATC
Flanking Amino Acid:
WCWLDFLIVDVSLVSLVAHA
Intron Amino Acid Position:
963

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
83.8
34.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.1
0.68
0.8
74.3
35.6
Minor 5ss
42.7
-0.8
3.2
64
40.7
Minor BPS
65.4
0.47
1.7
75.04
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046065
23046379 - 23091426
45048
ENSAPLT00000017519
23046379 - 23091426
45048