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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23075594_23076358_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23075594 - 23076358
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
ACTTGCTTACTC
Flanking Amino Acid:
IAGIITNTMEELEESRQKCP
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.2
28.4
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
83.4
0.75
0.7
81.4
23.6
Minor 5ss
41.1
-1
2.7
51.5
45.7
Minor BPS
51.5
0.03
2
63.94
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046065
23046379 - 23091426
45048