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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23076492_23077133_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23076492 - 23077133
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATAATA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
LSPSGQLLPESTTTEIDIKK
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
0.9
78.8
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
31.7
-2.1
3
40.3
45.4
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046065
23046379 - 23091426
45048