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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23076492_23082806_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23076492 - 23082806
Intron Length:
6315

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTT|GCATGATAT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTTATA
Flanking Amino Acid:
SLSIFLCMMFSTTTEIDIKK
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
56
37.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.7
1.01
0.5
91.9
19.2
Minor 5ss
37.9
-1.4
4.2
61.2
44.7
Minor BPS
66.5
0.51
1.5
77.98
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017519
23046379 - 23091426
45048