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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23083659_23084890_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23083659 - 23084890
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACAC
Flanking Amino Acid:
FLLCGNSSDAGKCPEEFICV
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.9
40
Major BPS
100
1.24
0.5
100
0
Major PPT
86.6
0.82
0.6
81.5
30.5
Minor 5ss
37.8
-1.4
3
42.6
44.5
Minor BPS
52.2
0.05
2
72.18
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046065
23046379 - 23091426
45048
ENSAPLT00000017519
23046379 - 23091426
45048