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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23084955_23085470_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23084955 - 23085470
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTGTAATAATT
Flanking Amino Acid:
FDWTAYIENESHFYRLEGQK
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
80
0.75
1
78.6
31
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
48.8
-0
1.9
72
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046065
23046379 - 23091426
45048