Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23085708_23086580_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23085708 - 23086580

Intron Length:

873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGCG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

AAATATTTAATG

Flanking Amino Acid:

RALKTISVIPGLKTIVGALI

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.6

36.5

Major BPS

90.7

1.01

0.7

19.9

Major PPT

81.5

0.71

0.8

75.6

32.8

Minor 5ss

25.3

-2.8

3.1

30.1

43.1

Minor BPS

56.5

0.07

1.5

56.95

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046065

23046379 - 23091426

45048