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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23086851_23087341_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23086851 - 23087341
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTCATTTCC
5'SS Class:
weak_major
3'SS Sequence:
GTATATAACAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGATTTAATT
Flanking Amino Acid:
RDPWNWLDFIFVNLGNVSAL
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.4
54.3
37.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
46.1
-0.2
1.7
47.4
43.6
Minor 5ss
39.5
-1.2
2.7
52
38.5
Minor BPS
62.3
0.46
1.6
77.31
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017519
23046379 - 23091426
45048