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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23087457_23088299_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23087457 - 23088299
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTACTTTGATG
Flanking Amino Acid:
SKLPEWTKNVEYTFTGIYTF
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
81
0.7
0.8
76.8
32
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
67.5
0.4
1.3
70.86
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011920
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046065
23046379 - 23091426
45048
ENSAPLT00000017519
23046379 - 23091426
45048