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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23201795_23204351_F

Intron Information:

Intron Rank:
141851
Intron Class:
major
Intron Phase:
Intron Coordinates:
23201795 - 23204351
Intron Length:
2557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGATAC
5'SS Class:
major
3'SS Sequence:
TTTATCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGGCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.2
30.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.2
0.75
0.9
74.6
39.8
Minor 5ss
40.7
-1
3.1
55.3
42.3
Minor BPS
64.2
0.52
1.7
79.35
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026357
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018344
23201419 - 23204835
3417