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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23449564_23455200_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23449564 - 23455200
Intron Length:
5637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATGTCCTAAACA
Flanking Amino Acid:
KALKTLTFKLASGCDGTEIP
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
70.8
0.65
1.7
77.65
39.3

Associated Gene:

Gene:
STK39
Ensembl Gene ID:
ENSAPLG00000011513
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011989
23449489 - 23521880
72392