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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23455266_23470308_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23455266 - 23470308
Intron Length:
15043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTGTAAAA
Flanking Amino Acid:
GLVDGHDVVIVAANLQKIVD
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
80.8
27
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
39.8
-1.1
2.9
52
45.2
Minor BPS
62.9
0.4
2.1
80.33
35.6

Associated Gene:

Gene:
STK39
Ensembl Gene ID:
ENSAPLG00000011513
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011989
23449489 - 23521880
72392