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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23487013_23489335_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23487013 - 23489335
Intron Length:
2323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
RRVKEEENMESQPAVSDEYS
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
83.4
0.75
0.8
81.5
29
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
STK39
Ensembl Gene ID:
ENSAPLG00000011513
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011989
23449489 - 23521880
72392