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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23507025_23507130_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23507025 - 23507130
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
GTTGGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGGTTTTTAACT
Flanking Amino Acid:
LKCKFFQKAKNREYLIEKLL
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.6
0.67
0.9
72.9
42.2
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
76.2
0.9
1.1
83.91
37.2

Associated Gene:

Gene:
STK39
Ensembl Gene ID:
ENSAPLG00000011513
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011989
23449489 - 23521880
72392