Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23507180_23510552_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

23507180 - 23510552

Intron Length:

3373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCAT

5'SS Class:

strong_major

3'SS Sequence:

ATTGATCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTATTATTGATC

Flanking Amino Acid:

SLCLQKDPSKRPTAAELLKC

Intron Amino Acid Position:

281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.1

1.09

0.7

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

78.6

0.64

0.9

74.3

40.5

Minor 5ss

35.9

-1.6

49.5

46.7

Minor BPS

59.9

0.29

1.6

70.93

34.2

Associated Gene:

Gene:

STK39

Ensembl Gene ID:

ENSAPLG00000011513

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011989

23449489 - 23521880

72392