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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23516240_23521419_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23516240 - 23521419
Intron Length:
5180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TATTTCTTACAG
Flanking Amino Acid:
KCQTSMDELLKEIQAMSQCN
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
82.9
0.74
0.9
76.7
37.3
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
58.1
0.12
1.8
65.42
42.2

Associated Gene:

Gene:
STK39
Ensembl Gene ID:
ENSAPLG00000011513
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011989
23449489 - 23521880
72392