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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23521533_23521804_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23521533 - 23521804
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
GTTATATTAAGT
Flanking Amino Acid:
APKLYEMHLRGSGATAVVQA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.2
39.5
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
86.6
0.82
0.7
84.4
30.5
Minor 5ss
29.5
-2.4
3.4
39.1
46.7
Minor BPS
53
0.17
1.9
74.44
41.9

Associated Gene:

Gene:
STK39
Ensembl Gene ID:
ENSAPLG00000011513
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011989
23449489 - 23521880
72392