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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23578832_23614537_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23578832 - 23614537
Intron Length:
35706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGCGG
5'SS Class:
major
3'SS Sequence:
CTGTTTCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACT
Flanking Amino Acid:
CIFMIRLLFERFIAKPCALG
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
55.2
49
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77
0.61
0.8
73.2
31.7
Minor 5ss
35.7
-1.6
3.3
47.7
47.8
Minor BPS
66.1
0.59
1.7
82.56
39.6

Associated Gene:

Gene:
CERS6
Ensembl Gene ID:
ENSAPLG00000011316
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021349
23578662 - 23695660
116999
ENSAPLT00000011782
23578662 - 23695660
116999