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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23714045_23714173_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23714045 - 23714173
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAATCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGGCTTTTAAAA
Flanking Amino Acid:
LKEELMKKKEVVSSKNKAAK
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.6
0.35
1
56.4
43.1
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
56.7
0.21
1.4
62.33
37.6

Associated Gene:

Gene:
SPC25
Ensembl Gene ID:
ENSAPLG00000011090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011544
23712269 - 23715517
3249