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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23714321_23715104_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23714321 - 23715104
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
TGCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATGTTCATATTT
Flanking Amino Acid:
MIDKIQEYRNEILQQNKHIS
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
56.3
43.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.9
0.76
0.8
81
31
Minor 5ss
36.5
-1.5
3.5
49.8
46.8
Minor BPS
49.9
0.07
1.8
70.61
40.9

Associated Gene:

Gene:
SPC25
Ensembl Gene ID:
ENSAPLG00000011090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011544
23712269 - 23715517
3249