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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23715171_23715258_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23715171 - 23715258
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CTTGTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TTGTCCTTACAG
Flanking Amino Acid:
SCKESLKVLSEKWAKKLKEG
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
83.1
0.75
0.8
76.4
32.3
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
62.2
0.24
1.8
68.51
44.8

Associated Gene:

Gene:
SPC25
Ensembl Gene ID:
ENSAPLG00000011090
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011544
23712269 - 23715517
3249