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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23720956_23721760_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23720956 - 23721760
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTAGCTTGAACT
Flanking Amino Acid:
QFPITCETGPGSPSGHAMGS
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77.5
0.62
0.9
78.5
34.7
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
66.5
0.6
1.5
81.66
39.8

Associated Gene:

Gene:
G6PC2
Ensembl Gene ID:
ENSAPLG00000010817
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011269
23720290 - 23724521
4232