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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23721873_23722667_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23721873 - 23722667
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCATC
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AATATCTCAATT
Flanking Amino Acid:
WKDKSAVTLHRLTWSLLWSI
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.3
76.2
39.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
91.3
0.93
0.6
89.3
19.5
Minor 5ss
39.4
-1.2
2.9
52.1
44.7
Minor BPS
58.4
0.34
1.5
72.58
38.1

Associated Gene:

Gene:
G6PC2
Ensembl Gene ID:
ENSAPLG00000010817
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011269
23720290 - 23724521
4232