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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23731630_23731742_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23731630 - 23731742
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCG
5'SS Class:
major
3'SS Sequence:
CCCTTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTTCCCACAACT
Flanking Amino Acid:
TEGLHYSFVFRVISAIVTSG
Intron Amino Acid Position:
1047

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
41.5
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
79
0.65
0.7
72.8
25.4
Minor 5ss
29.4
-2.4
3.5
38.7
46.6
Minor BPS
57.2
0.3
1.9
79.18
42.3

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721