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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23735082_23739264_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23735082 - 23739264
Intron Length:
4183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTCTTTCAAA
Flanking Amino Acid:
YALLFSQILGTFSILDEEEQ
Intron Amino Acid Position:
810

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73.6
0.53
1
74.8
33.2
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
60.7
0.33
1.8
74.83
36.6

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721