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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23741120_23742065_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23741120 - 23742065
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TCCTCCTTCACA
Flanking Amino Acid:
FSRGSYRASLRASLRQRSRS
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
80.5
0.69
0.7
75.1
27
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
68.7
0.58
1.8
74.7
43.3

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721