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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23742142_23742837_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23742142 - 23742837
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TATACTGTATTT
Flanking Amino Acid:
DAALTRAATETTENNIEPNL
Intron Amino Acid Position:
685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
82
0.72
0.9
75.8
37.8
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
46.9
-0.1
2.2
69.39
42.1

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721