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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23745354_23746693_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23745354 - 23746693
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTGCTTTATTT
Flanking Amino Acid:
QRFYDPTDGMITLDGHDIRS
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.1
0.56
0.9
70.1
36.5
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
58.7
0.35
1.7
74.81
43.2

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721