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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23751248_23752621_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23751248 - 23752621
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTCACT
Flanking Amino Acid:
AFGGEKKEVERYDKNLVFAQ
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.3
0.88
0.7
84.3
30.8
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
65.9
0.58
2
87.83
37.1

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721