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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23752747_23754488_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23752747 - 23754488
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TATGGTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGAGCTGTAACC
Flanking Amino Acid:
IGVGAAIYGLAVAKLTGREL
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
71.5
38.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
71
0.47
0.9
65
41
Minor 5ss
33.1
-1.9
3.1
38.5
40.7
Minor BPS
49.7
-0
2.1
63.51
42.2

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721