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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23754661_23756434_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23754661 - 23756434
Intron Length:
1774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTTTCCCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATCTTATTATTT
Flanking Amino Acid:
SVGELNTRISDDVNKINEAI
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.9
0.7
0.7
74.1
31
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
51.2
0.11
1.8
70.72
40.8

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721