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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23756569_23757508_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23756569 - 23757508
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTATT
5'SS Class:
major
3'SS Sequence:
ATGCTCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTGCAATT
Flanking Amino Acid:
CAVLVLGYLQICLWVMAAAR
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.3
84.6
33.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.3
0.55
0.9
65.7
40.3
Minor 5ss
38.8
-1.3
2.9
52.7
37.9
Minor BPS
49.4
0.04
2.2
76.62
40.5

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721