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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23761800_23762203_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23761800 - 23762203
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCGT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGATTGTAAAAT
Flanking Amino Acid:
DLDGNSFKKSENFYAYEEPS
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
66.4
45.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.3
0.61
0.9
73.1
37.3
Minor 5ss
37.2
-1.4
3
46.9
42.5
Minor BPS
45.3
-0.2
2.3
66.3
44.1

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721